| Wednesday, Jul 1 | Thursday, Jul 2 | Friday, Jul 3 | Monday, Jul 6 | Tuesday, Jul 7 | Wednesday, Jul 8 | |
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| 09:00 - 10:30 | Introduction to the course and logistics; who's who | Introduction to genome annotation and model reconstruction | Model Validation | Strain optimization + other modeling paradigms | Community and microbiome modeling II | Integration of AI and metabolic models |
| 10:30 - 10:45 | Break |
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| 10:45 - 12:15 | Basics on flux analysis and constraint-based modeling | Model reconstruction (hands-on I) | Model validation (hands-on) | Strain optimization - hands-on | Community and microbiome modeling - hands-on II | AI and metabolic models: hands-on |
| 12:15 - 13:30 | Lunch |
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| 13:30 - 15:00 |
Phenotype prediction methods I | Model reconstruction: network assembly | Phenotype prediction - omics data integration | Community and microbiome modeling I | Context-specific models and applications in human health | KBASE (14h) |
| 15:00 - 15:15 | Break |
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| 15:15 - 16:45 | Phenotype prediction methods (hands-on I) | Model reconstruction (hands-on II) | Phenotype prediction - omics integration (hands-on) | Community and microbiome modeling - hands-on I | Context-specific models - hands-on | KBASE |
| 16:45 - 17:00 | Break |
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| 17:00 - 17:45 |
Sheriff Malik
Making Computational Biology Models FAIR and Reproducible |
Application lecture |
Pablo Carbonell Automated Metabolic Pathway Tools in the Design-Build-Test-Learn Cycle |
Andreas Drager
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